\section{NFsim File List}
Here is a list of all files with brief descriptions:\begin{CompactList}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/{\bf NFsim.cpp} }{\pageref{NFsim_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/{\bf NFsim.hh} }{\pageref{NFsim_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFcore/{\bf complex.cpp} }{\pageref{complex_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFcore/{\bf molecule.cpp} }{\pageref{molecule_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFcore/{\bf moleculeType.cpp} }{\pageref{moleculeType_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFcore/{\bf NFcore.hh} (Contains declarations of core NFsim classes )}{\pageref{NFcore_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFcore/{\bf observable.cpp} }{\pageref{observable_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFcore/{\bf reactionClass.cpp} }{\pageref{reactionClass_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFcore/{\bf system.cpp} }{\pageref{system_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFcore/{\bf templateMolecule.cpp} }{\pageref{templateMolecule_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFcore/moleculeLists/{\bf moleculeList.cpp} }{\pageref{moleculeList_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFcore/moleculeLists/{\bf moleculeList.hh} }{\pageref{moleculeList_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFfunction/{\bf funcParser.cpp} }{\pageref{funcParser_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFfunction/{\bf function.cpp} }{\pageref{function_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFfunction/{\bf NFfunction.hh} }{\pageref{NFfunction_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFinput/{\bf commandLineParser.cpp} }{\pageref{commandLineParser_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFinput/{\bf NFinput.cpp} }{\pageref{NFinput_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFinput/{\bf NFinput.hh} }{\pageref{NFinput_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFinput/{\bf walk.cpp} }{\pageref{walk_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFinput/TinyXML/{\bf tinystr.cpp} }{\pageref{tinystr_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFinput/TinyXML/{\bf tinystr.h} }{\pageref{tinystr_8h}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFinput/TinyXML/{\bf tinyxml.cpp} }{\pageref{tinyxml_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFinput/TinyXML/{\bf tinyxml.h} }{\pageref{tinyxml_8h}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFinput/TinyXML/{\bf tinyxmlerror.cpp} }{\pageref{tinyxmlerror_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFinput/TinyXML/{\bf tinyxmlparser.cpp} }{\pageref{tinyxmlparser_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFoutput/{\bf NFoutput.cpp} }{\pageref{NFoutput_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFoutput/{\bf NFoutput.hh} }{\pageref{NFoutput_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/{\bf NFreactions.cpp} }{\pageref{NFreactions_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/{\bf NFreactions.hh} }{\pageref{NFreactions_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/mappings/{\bf mapping.cpp} }{\pageref{mapping_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/mappings/{\bf mapping.hh} }{\pageref{mapping_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/mappings/{\bf mappingGenerator.cpp} }{\pageref{mappingGenerator_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/mappings/{\bf mappingGenerator.hh} }{\pageref{mappingGenerator_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/mappings/{\bf mappingSet.cpp} }{\pageref{mappingSet_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/mappings/{\bf mappingSet.hh} }{\pageref{mappingSet_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/reactantLists/{\bf reactantList.cpp} }{\pageref{reactantList_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/reactantLists/{\bf reactantList.hh} }{\pageref{reactantList_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/reactantLists/{\bf reactantTree.cpp} }{\pageref{reactantTree_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/reactantLists/{\bf reactantTree.hh} }{\pageref{reactantTree_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/reactions/{\bf DORreaction.cpp} }{\pageref{DORreaction_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/reactions/{\bf reaction.cpp} }{\pageref{reaction_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/reactions/{\bf reaction.hh} }{\pageref{reaction_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/transformations/{\bf speciesCreator.cpp} }{\pageref{speciesCreator_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/transformations/{\bf speciesCreator.hh} }{\pageref{speciesCreator_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/transformations/{\bf transformation.cpp} }{\pageref{transformation_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/transformations/{\bf transformation.hh} }{\pageref{transformation_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/transformations/{\bf transformationSet.cpp} }{\pageref{transformationSet_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFreactions/transformations/{\bf transformationSet.hh} }{\pageref{transformationSet_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFtest/simple\_\-system/{\bf simple\_\-system.cpp} }{\pageref{simple__system_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFtest/simple\_\-system/{\bf simple\_\-system.hh} }{\pageref{simple__system_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFtest/tlbr/{\bf tlbr.cpp} }{\pageref{tlbr_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFtest/tlbr/{\bf tlbr.hh} }{\pageref{tlbr_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFtest/transcription/{\bf transcription.cpp} }{\pageref{transcription_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFtest/transcription/{\bf transcription.hh} }{\pageref{transcription_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFutil/{\bf conversion.cpp} }{\pageref{conversion_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFutil/{\bf NFutil.hh} }{\pageref{NFutil_8hh}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFutil/{\bf random.cpp} }{\pageref{random_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFutil/MTrand/{\bf mtrand.cpp} }{\pageref{mtrand_8cpp}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFutil/MTrand/{\bf mtrand.h} }{\pageref{mtrand_8h}}{}
\item\contentsline{section}{/home/msneddon/eclipse/ganymede\_\-cpp/workspace/NFsim\_\-svn/src/NFutil/MTrand/{\bf mttest.cpp} }{\pageref{mttest_8cpp}}{}
\end{CompactList}
